arXiv preprint
Zero-Shot Neural Priors for Generalizable Cross-Subject and Cross-Task EEG Decoding
Baimam Boukar, Brandone Fonya, Nchofon Tagha, Pauline Nyaboe
A zero-shot EEG decoding framework that learns subject and task-invariant neural priors from large-scale HBN data, enabling robust cross-subject generalization without calibration.
Under review, AAAI 2027
C-BiJEPA: Complementary Bidirectional Joint-Embedding Predictive Learning for Structured Image Representation Learning
Brandone Fonya, Prasenjit Mitra
Bidirectional self-supervised representation learning with joint-embedding predictive architectures for learning robust representations from unlabeled data.
MICCAI 2026: AFRICAI, (Springer LNCS)
Preprocessing as Prior: Rethinking Self-Supervised Representation Learning in Cardiac Sound Classification
Mona Aman, Godbright Nixon Uiso, Brandone Fonya, John Bosco Gachomba Thuo, Maurine Wanjiku Gatimu, Carine Mukamakuza
An empirical study showing how signal preprocessing can act as an implicit prior in self-supervised learning for cardiac sound classification.
European Journal of Public Health, 2025
Optimizing healthcare facility distribution in Rwanda: a data-driven approach
Brandone Fonya, Irene Busah, Michaella Rugumbira, Nchofon Tagha, Emily Aiken
Analyzed health facility distribution in Rwanda using geospatial mapping and ML to propose equitable resource allocation based on disease prevalence.
NeurIPS 2026 Workshop: Africa in AI.
VARET: Decomposing Robustness for Multi-Site Phonocardiogram Classification under Missing Auscultation Sites and Cohort Shift
Yvette Tuyambaze, Brandone Fonya, Carine Mukamakuza
Introduced VARET, a valve-aware transformer that separately evaluates robustness to missing auscultation sites and shifts across patient cohorts for multi-site phonocardiogram classification. The framework demonstrates improved patient-level classification performance and reveals limitations in zero-shot cross-cohort generalization.
NeurIPS 2026 Workshop: Africa in AI.
Preprocessing Filter Choice Affects Severity Calibration but Not Accuracy in Cardiac Murmur Classification
Nimat Ohunene Sadiq, Brandone Fonya, Carine Mukamakuza
Evaluated the impact of PCG preprocessing filter choices and deep learning architectures (LSTM and CNNs) on murmur severity classification, with the aim of understanding their influence on classification performance and severity calibration. Found that filter choice had minimal impact on overall accuracy but introduced consistent severity prediction bias, while model architecture had a significantly stronger effect, highlighting important considerations for reliable cardiac screening and triage in low-resource settings.
NeurIPS 2026 Workshop: Global South AI.
CardioSSL: When Does Self-Supervision Help Heart Sound Screening? A Controlled Benchmark
Brandone Fonya, Mona Aman, Godbright Nixon Uiso, Maurine Wanjiku Gatimu, Olatunji Damilare Emmanuel, Carine Mukamakuza
A controlled benchmark of five SSL objectives (SimCLR, BYOL, MAE, DINO, JEPA) for heart sound screening. We showed that SSL helps only in the low label regime, when labeled data is scare: JEPA and MAE gain 9.44 and 8.89 balanced-accuracy points at 10 percent of labels, but the advantage decays to nothing at full supervision, and no method survives transfer to an external pediatric cohort.
WiML @ NeurIPS 2026 (Poster)
What Survives Phonocardiogram Tokenization? Tokenizer Design and Interface Geometry Shape Clinical Recoverability
Mona Aman, Brandone Fonya, Godbright Nixon Uiso, Maurine Wanjiku Gatimu, Carine Mukamakuza
Localizes where clinically relevant heart sound information is lost when phonocardiograms are compressed into discrete tokens. Two distinct bottlenecks emerge: tokenizer training determines what survives compression, while interface geometry determines what a bounded model can access. A factorized categorical interface holds murmur recoverability near constant across a 3.9-fold rate reduction, while encoding the same states as flat token IDs drops it sharply at every rate.