/ Brandone Fonya
AI Researcher / Machine Learning Engineer

Brandone Fonya

MEng, Artificial Intelligence · Carnegie Mellon University

Building machine learning that reads the signals around us, from cardiac sounds to medical images, with a focus on healthcare and social good.

Brandone Fonya

I am a research associate, teaching assistant, and Masters graduate in Artificial Intelligence from Carnegie Mellon University's College of Engineering. My research focuses on using machine learning to process, understand, and make inferences from signals in the world around us, with a particular interest in visual and multimodal representations.

Prior to CMU, I earned a Bachelor's degree with First Class Honors in Software Engineering from The ICT University in Cameroon, graduating first in my department. I currently work with the AI Healthcare Research Lab at CMU, where I work on machine learning methods for understanding cardiac health through the joint analysis of electrocardiogram (ECG) and phonocardiogram (PCG) signals.

Beyond work, I enjoy traveling, reading, and watching documentaries.

Deep Learning Representation Learning Generative AI Multimodal ML Healthcare AI AI for Social Good

Email: bfonya [at] alumni [dot] cmu [dot] edu

News

10/2026 Recipient of the NeurIPS 2026 Travel Award to attend NeurIPS 2026, Sydney, Australia.
09/2026 Attending MICCAI 2026 at Strasbourg Convention Center, France.
09/2026 One paper (first author) accepted at Global South AI @ NeurIPS 2026.
09/2026 Invited to review for Africa In AI @ NeurIPS 2026.
09/2026 Three co-authored papers accepted at WiML @ NeurIPS 2026.
09/2026 Reviewing for Global South AI @ NeurIPS 2026, happening in Sydney, Australia.
09/2026 Our project idea "Nkata" made top 2 and won USD 50,000 seed at the 2026 Digital Humanism Innovation Bootcamp.
08/2026 One paper accepted for MICCAI 2026, AFRICAI workshop happening in Strasbourg, France.
07/2026 Accepted for the 2nd African Digital Humanism Summer School 2026, Accra, Ghana.
06/2026 Attended the AFRETEC 2026 Bioinformatics and AI Bootcamp, Dakar, Senegal.
05/2026 Graduated from Carnegie Mellon University with a Masters degree in Artificial Intelligence.
01/2026 One paper accepted for Oral presentation at IEEE/CVF WACV 2026 workshop, Tucson, Arizona.
01/2026 Joined CMU's (18-662) Principles and Engineering Applications of AI as Graduate TA for Spring 2026.
01/2026 Joined CMU's (18-661) Introduction to Machine Learning for Engineers as Graduate TA for Spring 2026.
12/2025 Featured by Carnegie Mellon University for research journey to China. Read here.
09/2025 Started as Graduate TA for (18-751) Applied Stochastic Processes, Fall 2025.
07/2025 Joined Autonomous Intelligence Lab as research intern at Westlake University, China.
06/2025 Paper accepted at European Public Health Conference 2025, Helsinki, Finland.
05/2025 Visited University of Cape Town to explore AI research opportunities.

Selected research

Efficient deep learning for computer vision and healthcare, with a focus on representation learning, medical imaging, and AI that benefits humanity.

arXiv preprint

Zero-Shot Neural Priors for Generalizable Cross-Subject and Cross-Task EEG Decoding

Baimam Boukar, Brandone Fonya, Nchofon Tagha, Pauline Nyaboe

A zero-shot EEG decoding framework that learns subject and task-invariant neural priors from large-scale HBN data, enabling robust cross-subject generalization without calibration.

Under review, AAAI 2027

C-BiJEPA: Complementary Bidirectional Joint-Embedding Predictive Learning for Structured Image Representation Learning

Brandone Fonya, Prasenjit Mitra

Bidirectional self-supervised representation learning with joint-embedding predictive architectures for learning robust representations from unlabeled data.

MICCAI 2026: AFRICAI, (Springer LNCS)

Preprocessing as Prior: Rethinking Self-Supervised Representation Learning in Cardiac Sound Classification

Mona Aman, Godbright Nixon Uiso, Brandone Fonya, John Bosco Gachomba Thuo, Maurine Wanjiku Gatimu, Carine Mukamakuza

An empirical study showing how signal preprocessing can act as an implicit prior in self-supervised learning for cardiac sound classification.

European Journal of Public Health, 2025

Optimizing healthcare facility distribution in Rwanda: a data-driven approach

Brandone Fonya, Irene Busah, Michaella Rugumbira, Nchofon Tagha, Emily Aiken

Analyzed health facility distribution in Rwanda using geospatial mapping and ML to propose equitable resource allocation based on disease prevalence.

NeurIPS 2026 Workshop: Africa in AI.

VARET: Decomposing Robustness for Multi-Site Phonocardiogram Classification under Missing Auscultation Sites and Cohort Shift

Yvette Tuyambaze, Brandone Fonya, Carine Mukamakuza

Introduced VARET, a valve-aware transformer that separately evaluates robustness to missing auscultation sites and shifts across patient cohorts for multi-site phonocardiogram classification. The framework demonstrates improved patient-level classification performance and reveals limitations in zero-shot cross-cohort generalization.

NeurIPS 2026 Workshop: Africa in AI.

Preprocessing Filter Choice Affects Severity Calibration but Not Accuracy in Cardiac Murmur Classification

Nimat Ohunene Sadiq, Brandone Fonya, Carine Mukamakuza

Evaluated the impact of PCG preprocessing filter choices and deep learning architectures (LSTM and CNNs) on murmur severity classification, with the aim of understanding their influence on classification performance and severity calibration. Found that filter choice had minimal impact on overall accuracy but introduced consistent severity prediction bias, while model architecture had a significantly stronger effect, highlighting important considerations for reliable cardiac screening and triage in low-resource settings.

NeurIPS 2026 Workshop: Global South AI.

CardioSSL: When Does Self-Supervision Help Heart Sound Screening? A Controlled Benchmark

Brandone Fonya, Mona Aman, Godbright Nixon Uiso, Maurine Wanjiku Gatimu, Olatunji Damilare Emmanuel, Carine Mukamakuza

A controlled benchmark of five SSL objectives (SimCLR, BYOL, MAE, DINO, JEPA) for heart sound screening. We showed that SSL helps only in the low label regime, when labeled data is scare: JEPA and MAE gain 9.44 and 8.89 balanced-accuracy points at 10 percent of labels, but the advantage decays to nothing at full supervision, and no method survives transfer to an external pediatric cohort.

WiML @ NeurIPS 2026 (Poster)

What Survives Phonocardiogram Tokenization? Tokenizer Design and Interface Geometry Shape Clinical Recoverability

Mona Aman, Brandone Fonya, Godbright Nixon Uiso, Maurine Wanjiku Gatimu, Carine Mukamakuza

Localizes where clinically relevant heart sound information is lost when phonocardiograms are compressed into discrete tokens. Two distinct bottlenecks emerge: tokenizer training determines what survives compression, while interface geometry determines what a bounded model can access. A factorized categorical interface holds murmur recoverability near constant across a 3.9-fold rate reduction, while encoding the same states as flat token IDs drops it sharply at every rate.

Teaching & service

Carnegie Mellon University

(18-751) Applied Stochastic Processes Graduate TA, Fall 2025 & Fall 2026

Service

Conference Reviewer, Applied Machine Learning Days (AMLD) Africa 2026
Conference Reviewer, Global South AI @ NeurIPS 2026
IEEE Student Member, 2024 to present

Beyond the lab

Outside of research, I mentor students in research and across the STEM fields, helping early-career scientists and engineers find their footing and build work they are proud of.

I am also happiest with a boarding pass in hand. I love traveling the world, meeting new people, and collecting stories from every place I land.

7 On a mission to visit all seven wonders of the world by 2028.
Follow my adventures
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Contact

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